PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05948g04001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 329aa    MW: 37038.5 Da    PI: 5.4257
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05948g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind33.21.4e-1043119299
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl k++e+led+e++ +i+w+++++sf+++d+++fa +vLpk  + +            gFkkv + +          e+++++F
  Niben101Scf05948g04001.1  43 FLLKTFEMLEDPETDPFIHWTSSKTSFLITDTNKFAIEVLPKKNESQ------------GFKKVCSYK---------SEYANPWF 106
                               9***************************************9753332............566665555.........34666666 PP

                               XXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikr 99 
                               + gkk+ l++ik 
  Niben101Scf05948g04001.1 107 RGGKKHWLKNIKS 119
                               6666666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-1138112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.4E-1639120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-1639119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.6E-843119IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MENNNQENAE NGAAIIGLEG RRGGGAGRGM RLTGLRGVSP PPFLLKTFEM LEDPETDPFI  60
HWTSSKTSFL ITDTNKFAIE VLPKKNESQG FKKVCSYKSE YANPWFRGGK KHWLKNIKSR  120
IQLSKTNKPQ QGSHSSCVDP MKDNLEEEVE KLRNDNISLK IELQKLKDRQ ENMRALFPTL  180
KGCRKDTEIS NILKLFVKKS KVREDSSSND TRKRPPMVES PDRVANSVQD GIGQTSNSAG  240
GSVSSNEQQK EEATAKNDKN REFWEKLFED DSESQNEEAE SEQALNRSKA MAEIEEMVES  300
KIAMEGEALI AKAAAGLDEE MEAYLQLWT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757521.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLM1CRG31e-166M1CRG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000730651e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA129701518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-28heat shock transcription factor A2